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Cho, A. ., Wendel, J. ., Vaidehi, N. ., Kekenes-Huskey, P. ., Floriano, W. ., Maiti, P. ., & WA, 3rd G. (2005). The MPSim-Dock hierarchical docking algorithm: application to the eight trypsin inhibitor cocrystals. Journal of Computational Chemistry, 26(1), 48-71. https://doi.org/10.1002/jcc.20118 (Original work published 2005)

Nivedha, A. ., Tautermann, C. ., Bhattacharya, S. ., Lee, S. ., Casarosa, P. ., Kollak, I. ., … Vaidehi, N. . (2018). Identifying Functional Hotspot Residues for Biased Ligand Design in G-protein-coupled Receptors. Molecular Pharmacology. https://doi.org/10.1124/mol.117.110395 (Original work published 2018)