Bagley, R., Sousa, V., Niemiller, M., & Linnen, C. (2017). History, geography and host use shape genomewide patterns of genetic variation in the redheaded pine sawfly (Neodiprion lecontei). Molecular Ecology, 26(4), 1022-1044. https://doi.org/10.1111/mec.13972

Pfeifer, S., Laurent, S., Sousa, V., Linnen, C., Foll, M., Excoffier, L., … Jensen, J. (2018). The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow. Molecular Biology and Evolution, 35(4), 792-806. https://doi.org/10.1093/molbev/msy004 (Original work published 2018)

Bendall, E., Bagley, R., Sousa, V., & Linnen, C. (2022). Faster-haplodiploid evolution under divergence-with-gene-flow: Simulations and empirical data from pine-feeding hymenopterans. Molecular Ecology, 31(8), 2348-2366. https://doi.org/10.1111/mec.16410