Jeramiah Smith
Research Interests:
- Genome Biology
- Vertebrate Evolution
- Pluripotency
- Cancer
- Regeneration
- biology
Education
Postdoctoral Fellow, U. Washington Dept. Genome Sciences & Benaroya Res. Inst. at Virginia Mason (2007 - 2011)
University of Kentucky, Ph.D. in Biology, 2007
Colorado State University, M.S. in Biology, 2002
Black Hills State University, B.S. in Biology, cum laude, 1998
Research
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CURRENTLY ACCEPTING GRADUATE STUDENTS - 2019/20 20/21 (FALL/SUMMER) FOR NSF and NIH-FUNDED RESEARCH ASSISTANT TO STUDY PROGRAMMED GENOME REARRANGEMENT
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CLICK HERE FOR SMITH LAB WEBPAGE
PubMed Publications*:
- "A genome-wide assessment of the ancestral neural crest gene regulatory network." Nature communications 10, 1 (2019): 4689. Details. Full text
- "Germline-Specific Repetitive Elements in Programmatically Eliminated Chromosomes of the Sea Lamprey (<i>Petromyzon marinus</i>)." Genes 10, 10 (2019): Details. Full text
- "Highly conserved molecular pathways, including Wnt signaling, promote functional recovery from spinal cord injury in lampreys." Scientific reports 8, 1 (2018): 742. Details. Full text
- "Programmed DNA Elimination: Keeping Germline Genes in Their Place." Current biology : CB 28, 10 (2018): R601-R603. Details. Full text
- "Using transcriptomics to enable a plethodontid salamander (Bolitoglossa ramosi) for limb regeneration research." BMC genomics 19, 1 (2018): 704. Details. Full text
- "Deep ancestry of programmed genome rearrangement in lampreys." Developmental biology 429, 1 (2017): 31-34. Details. Full text
- "Adaptive Prediction Emerges Over Short Evolutionary Time Scales." Genome biology and evolution 9, 6 (2017): 1616-1623. Details. Full text
- "Demographic, Clinical, and Service Utilization Factors Associated with Suicide-Related Visits among Alaska Native and American Indian Adults." Suicide & life-threatening behavior 47, 1 (2017): 27-37. Details. Full text
- "Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Ambystoma mexicanum." Scientific reports 7, 1 (2017): 6. Details. Full text
- "BVES regulates c-Myc stability via PP2A and suppresses colitis-induced tumourigenesis." Gut 66, 5 (2017): 852-862. Details. Full text
- "Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast." PLoS computational biology 13, 5 (2017): e1005489. Details. Full text
- "The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons." Nature genetics 48, 4 (2016): 427-37. Details. Full text
- "Characterization of Somatically-Eliminated Genes During Development of the Sea Lamprey (Petromyzon marinus)." Molecular biology and evolution 33, 9 (2016): 2337-44. Details. Full text
- "Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution." Nature genetics 45, 4 (2013): 415-21, 421e1-2. Details. Full text
- "Salamander Hox clusters contain repetitive DNA and expanded non-coding regions: a typical Hox structure for non-mammalian tetrapod vertebrates?" Human genomics 7, (2013): 9. Details. Full text
- "The African coelacanth genome provides insights into tetrapod evolution." Nature 496, 7445 (2013): 311-6. Details. Full text
- "Genetic consequences of programmed genome rearrangement." Current biology : CB 22, 16 (2012): 1524-9. Details. Full text
- "A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome." Molecular biology and evolution 29, 3 (2012): 985-93. Details. Full text
- "Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes." Genome research 21, 8 (2011): 1306-12. Details. Full text
- "Development and analysis of a germline BAC resource for the sea lamprey, a vertebrate that undergoes substantial chromatin diminution." Chromosoma 119, 4 (2010): 381-9. Details. Full text
- "Genome biology of the cyclostomes and insights into the evolutionary biology of vertebrate genomes." Integrative and comparative biology 50, 1 (2010): 130-7. Details. Full text
- "Microarray analysis of a salamander hopeful monster reveals transcriptional signatures of paedomorphic brain development." BMC evolutionary biology 10, (2010): 199. Details. Full text
- "Programmed loss of millions of base pairs from a vertebrate genome." Proceedings of the National Academy of Sciences of the United States of America 106, 27 (2009): 11212-7. Details. Full text
- "Amphibian sex determination: segregation and linkage analysis using members of the tiger salamander species complex (Ambystoma mexicanum and A. t. tigrinum)." Heredity 102, 6 (2009): 542-8. Details. Full text
- "Genic regions of a large salamander genome contain long introns and novel genes." BMC genomics 10, (2009): 19. Details. Full text
- "Effect of thyroid hormone concentration on the transcriptional response underlying induced metamorphosis in the Mexican axolotl (Ambystoma)." BMC genomics 9, (2008): 78. Details. Full text
- "Bird and mammal sex-chromosome orthologs map to the same autosomal region in a salamander (ambystoma)." Genetics 177, 1 (2007): 607-13. Details. Full text
- "MapToGenome: a comparative genomic tool that aligns transcript maps to sequenced genomes." Evolutionary bioinformatics online 3, (2007): 15-25. Details.
- "Microarray analysis identifies keratin loci as sensitive biomarkers for thyroid hormone disruption in the salamander Ambystoma mexicanum." Comparative biochemistry and physiology. Toxicology & pharmacology : CBP 145, 1 (2007): 15-27. Details. Full text
- "Gene order data from a model amphibian (Ambystoma): new perspectives on vertebrate genome structure and evolution." BMC genomics 7, (2006): 219. Details. Full text
- "A comprehensive expressed sequence tag linkage map for tiger salamander and Mexican axolotl: enabling gene mapping and comparative genomics in Ambystoma." Genetics 171, 3 (2005): 1161-71. Details. Full text
- "Evolution of salamander life cycles: a major-effect quantitative trait locus contributes to discrete and continuous variation for metamorphic timing." Genetics 170, 1 (2005): 275-81. Details. Full text
- "An indicator cell assay for blood-based diagnostics." PloS one 12, 6 (0): e0178608. Details. Full text
* Publications are automatically pulled from pubmed.gov based on a user-specific query. Results may include incorrect citations. See: Tutorial on improving PubMed results.