Nataliya Timoshevskaya

nti225's picture
  • Postdoctoral Scholar
  • Biology
200, TH Morgan
Research Interests:
Research

Currently I am a postdoc in Dr. Jeramiah Smith's Lab and my research is focused on bioinformatics and more precisely on different computational aspects of new generation sequence analysis. Having my background in applied mathematics and computer science I was fascinated by the complexity of biological systems, that sometimes the most contemporary algorithms and computational resources can not overcome. I am involved in various projects that study the genomes of key vertebrate groups, including studies on genome rearrangements, sturctural variations, inter and inra species variations, sex determination. Because of the complexity and/or huge size of the genomes, traditional computers and approaches do not always work efficiently, so we are looking for alternative solutions, often engaging parallel computations and high performance computers.

 

Education

Masters degree in Mathematics, Tomsk State University, Russia

Ph.D. Technical Sciences, Tomsk State University, Russia

PubMed Publications*: 
  • Hess, JE ;Smith, JJ ;Timoshevskaya, N ;Baker, C.;Caudill, CC ;Graves, D ;Keefer, ML ;Kinziger, AP ;Moser, ML ;Porter, LL ;Silver, G ;Whitlock, SL ;, "Genomic islands of divergence infer a phenotypic landscape in Pacific lamprey." Molecular ecology 29, 20 (2020): 3841-3856. Details. Full text
  • Smith, JJ ;Timoshevskaya, N ;Timoshevskiy, VA ;Keinath, MC ;Hardy, D ;Voss, SR "A chromosome-scale assembly of the axolotl genome." Genome research 29, 2 (2019): 317-324. Details. Full text
  • Timoshevskiy, VA ;Timoshevskaya, NY ;Smith, JJ "Germline-Specific Repetitive Elements in Programmatically Eliminated Chromosomes of the Sea Lamprey (<i>Petromyzon marinus</i>)." Genes 10, 10 (2019): Details. Full text
  • Smith, JJ ;Timoshevskaya, N ;Ye, C ;Holt, C.;Keinath, MC ;Parker, HJ ;Cook, ME ;Hess, JE ;, ;Lamanna, F ;Kaessmann, H ;Timoshevskiy, VA ;Waterbury, CKM ;Saraceno, C ;Wiedemann, LM ;Robb, SMC ;Baker, C.;Eichler, EE ;Hockman, D ;Sauka-Spengler, T.;Yandell, M.;Krumlauf, R.;Elgar, G.;Amemiya, CT "The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution." Nature genetics 50, 2 (2018): 270-277. Details. Full text
  • Keinath, MC ;Timoshevskaya, N ;Timoshevskiy, VA ;Voss, SR ;Smith, JJ "Miniscule differences between sex chromosomes in the giant genome of a salamander." Scientific reports 8, 1 (2018): 17882. Details. Full text
  • Woodcock, MR ;Vaughn-Wolfe, J ;Elias, A ;Kump, DK ;Kendall, KD ;Timoshevskaya, N ;Timoshevskiy, V ;Perry, DW ;Smith, JJ ;Spiewak, JE ;Parichy, DM ;Voss, SR "Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Ambystoma mexicanum." Scientific reports 7, 1 (2017): 6. Details. Full text
  • Keinath, MC ;Timoshevskiy, VA ;Timoshevskaya, NY ;Tsonis, PA ;Voss, SR ;Smith, JJ "Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing." Scientific reports 5, (2015): 16413. Details. Full text
* Publications are automatically pulled from pubmed.gov based on a user-specific query. Results may include incorrect citations. See: Tutorial on improving PubMed results.
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